DNA Binding Motif

Accessions: MA0931.1 (JASPAR 2018)
Names: ABI5
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: PBM
Length: 10
Consensus: bgmCACGTGk
Weblogo:
PSSM: P0 A C G T
01 181 257 257 306 b
02 87 87 660 167 g
03 608 314 0 78 m
04 0 922 78 0 C
05 999 0 0 0 A
06 0 999 0 0 C
07 0 0 999 0 G
08 0 0 0 999 T
09 152 70 709 70 G
10 164 164 337 336 k
Binding TFs: Q9SJN0 (Basic region leucine zipper, bZIP transcription factor)
Binding Sites: MA0931.1.1
MA0931.1.10
MA0931.1.11
MA0931.1.12
MA0931.1.13
MA0931.1.14
MA0931.1.15
MA0931.1.16
MA0931.1.17
MA0931.1.18
MA0931.1.19
MA0931.1.2
MA0931.1.20
MA0931.1.3
MA0931.1.4
MA0931.1.5
MA0931.1.6
MA0931.1.7
MA0931.1.8
MA0931.1.9
Publications: Kim S. Y., Ma J., Perret P., Li Z., Thomas T. L. Arabidopsis ABI5 subfamily members have distinct DNA-binding and transcriptional activities.. Plant Physiol. 130:688-697 (2002). [Pubmed]

Disclaimer

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research.