DNA Binding Motif
| Accessions: | MA1376.1 (JASPAR 2024), M0071 (AthalianaCistrome v4_May2016) |
| Names: | DEAR3, DEAR3.DAP, T09273; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 17 |
| Consensus: | wwwTGTCGGTGrhkrhr |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 192 143 90 172 w 02 231 61 140 165 w 03 223 7 112 255 w 04 18 6 131 442 T 05 0 0 597 0 G 06 14 1 14 568 T 07 0 597 0 0 C 08 0 0 597 0 G 09 0 0 596 1 G 10 1 71 0 525 T 11 2 1 592 2 G 12 179 100 277 41 r 13 156 180 78 183 h 14 135 84 209 169 k 15 157 112 179 149 r 16 155 160 128 154 h 17 191 76 187 143 r |
| Binding TFs: | T09273 (AP2 domain) |
| Binding Sites: | MA1376.1.4 MA1376.1.6 MA1376.1.2 MA1376.1.11 MA1376.1.1 MA1376.1.10 MA1376.1.12 MA1376.1.13 MA1376.1.14 MA1376.1.15 MA1376.1.16 MA1376.1.17 / MA1376.1.19 MA1376.1.18 MA1376.1.20 MA1376.1.3 MA1376.1.5 MA1376.1.7 MA1376.1.8 MA1376.1.9 |
| Publications: | Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.