DNA Binding Motif

Accessions: MA0247.2 (JASPAR 2024)
Names: tin
Organisms: Drosophila melanogaster
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-chip
Length: 10
Consensus: wbTCrAGTGs
Weblogo:
PSSM: P0 A C G T
01 136 54 80 245 w
02 0 188 137 190 b
03 0 51 0 464 T
04 0 425 34 56 C
05 326 0 189 0 r
06 515 0 0 0 A
07 0 0 515 0 G
08 0 0 0 515 T
09 0 0 515 0 G
10 13 157 301 44 s
Type: Heterodimer
Binding TFs: P22711 (Homeobox domain)
P22711
Binding Sites: MA0247.2.1
MA0247.2.10
MA0247.2.11
MA0247.2.12
MA0247.2.13
MA0247.2.14
MA0247.2.15
MA0247.2.16
MA0247.2.17
MA0247.2.18
MA0247.2.19
MA0247.2.2
MA0247.2.20
MA0247.2.3
MA0247.2.4
MA0247.2.5
MA0247.2.6
MA0247.2.7
MA0247.2.8
MA0247.2.9
Publications: Noyes M.B, Christensen R.G, Wakabayashi A, Stormo G.D, Brodsky M.H, Wolfe S.A. Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites. Cell 133:1277-89 (2008). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.