DNA Binding Motif

						

			
Accessions: AsnC (RegulonDB 7.5)

			
Names: AsnC
Organisms: ECK12
Libraries: RegulonDB 7.5 1
1 Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed]
Length: 12
Consensus: KKWTTrwTGMwT
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      1      3      K
02      0      0      1      3      K
03      1      0      0      3      W
04      0      0      0      4      T
05      0      0      0      4      T
06      2      0      2      0      r
07      2      0      0      2      w
08      0      0      0      4      T
09      0      0      4      0      G
10      3      1      0      0      M
11      2      0      0      2      w
12      0      0      0      4      T
Binding TFs: ECK120004565 (AsnC family, HTH domain, AsnC-type helix-turn-helix domain, Winged helix-turn-helix DNA-binding)
Binding Sites: ECK120048773
ECK120048775
ECK120048792
ECK120048794
			
	
			


			

				

				
				
				
				

			

			

		

	
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