DNA Binding Motif

						

			
Accessions: MA1243.1 (JASPAR 2024), M0059 (AthalianaCistrome v4_May2016)

			
Names: DREB19, DREB2E, DREB19.DAP, T10073;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 17
Consensus: ywyhthmACCGMCwTwr
Weblogo: 
PSSM: P0      A      C      G      T
01    132    194    106    165      y
02    202    102    118    175      w
03    135    214     92    156      y
04    154    218     67    158      h
05    119     86    117    275      t
06    175    202     70    150      h
07    257    329      7      4      m
08    531      0     66      0      A
09      0    597      0      0      C
10      0    597      0      0      C
11      0      0    597      0      G
12    431    164      0      2      M
13      0    597      0      0      C
14    364     31      8    194      w
15     40    106      3    448      T
16    240     74     33    250      w
17    252     65    155    125      r
Type: Heterodimer
Binding TFs: O80917 / T10073 (AP2 domain)
O80917
Binding Sites: MA1243.1.1
MA1243.1.10
MA1243.1.11
MA1243.1.12
MA1243.1.13
MA1243.1.14
MA1243.1.15
MA1243.1.16
MA1243.1.17
MA1243.1.18
MA1243.1.19
MA1243.1.2
MA1243.1.20
MA1243.1.3
MA1243.1.4
MA1243.1.5
MA1243.1.6
MA1243.1.7
MA1243.1.8
MA1243.1.9
			
Publications: Medina J, Bargues M, Terol J, Pérez-Alonso M, Salinas J. The Arabidopsis CBF gene family is composed of three genes encoding AP2 domain-containing proteins whose expression Is regulated by low temperature but not by abscisic acid or dehydration. Plant Physiol 119:463-70 (1999). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.