DNA Binding Motif

Accessions: MA0964.1 (JASPAR 2018)
Names: BIM1
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: PBM
Length: 10
Consensus: bcaCGTGmyv
Weblogo:
PSSM: P0 A C G T
01 219 250 281 250 b
02 126 655 101 118 c
03 582 101 184 132 a
04 59 766 23 152 C
05 140 62 795 3 G
06 1 23 0 976 T
07 3 2 990 6 G
08 375 301 148 176 m
09 147 344 242 268 y
10 257 262 257 225 v
Binding TFs: Q9LEZ3 (Helix-loop-helix DNA-binding domain)
Binding Sites: MA0964.1.1
MA0964.1.10
MA0964.1.11
MA0964.1.12
MA0964.1.13
MA0964.1.14
MA0964.1.15
MA0964.1.16
MA0964.1.17
MA0964.1.18
MA0964.1.20 / MA0964.1.19
MA0964.1.2
MA0964.1.3
MA0964.1.4
MA0964.1.5
MA0964.1.6
MA0964.1.7
MA0964.1.8
MA0964.1.9
Publications: Yin Y, Vafeados D, Tao Y, Yoshida S, Asami T, Chory J. A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis. Cell 120:249-59 (2005). [Pubmed]

Disclaimer

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research.