DNA Binding Motif
Accessions: | prd-HD (DrosophilaTF 1.1) |
Names: | prd-HD |
Organisms: | Drosophila melanogaster |
Libraries: | DrosophilaTF 1.1 1 1 Down T.A, Bergman C.M, Su J, Hubbard T.J. Large-scale discovery of promoter motifs in Drosophila melanogaster. PLoS computational biology 3:e7 (2007). [Pubmed] |
Length: | 14 |
Consensus: | GaTAATyGATTAks |
Weblogo: | |
PSSM: | P0 A C G T 01 0 0.2414 0.6897 0.069 G 02 0.4483 0.2414 0.1724 0.1379 a 03 0 0 0 1 T 04 0.931 0 0.069 0 A 05 1 0 0 0 A 06 0 0 0 1 T 07 0 0.5172 0 0.4828 y 08 0 0 1 0 G 09 1 0 0 0 A 10 0 0 0 1 T 11 0 0.0345 0 0.9655 T 12 0.931 0 0 0.069 A 13 0.1724 0.1724 0.2759 0.3793 k 14 0.1034 0.4483 0.3103 0.1379 s |
Binding TFs: | prd-HD (Homeobox domain, 'Paired box' domain, Homeobox KN domain, Homeodomain-like domain) |
Binding Sites: | prd-HD_1 prd-HD_10 prd-HD_11 prd-HD_12 prd-HD_13 prd-HD_14 prd-HD_15 prd-HD_16 prd-HD_17 prd-HD_18 prd-HD_19 prd-HD_2 prd-HD_20 prd-HD_21 prd-HD_22 prd-HD_23 prd-HD_24 prd-HD_25 prd-HD_26 prd-HD_27 prd-HD_28 prd-HD_29 prd-HD_3 prd-HD_30 prd-HD_31 prd-HD_32 prd-HD_33 prd-HD_34 prd-HD_35 prd-HD_4 prd-HD_5 prd-HD_6 prd-HD_7 prd-HD_8 prd-HD_9 |
Publications: | Wilson D, Sheng G, Lecuit T, Dostatni N, Desplan C. Cooperative dimerization of paired class homeo domains on DNA. Genes & development 7:2120-34 (1993). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.