DNA Binding Motif

Accessions: prd-HD (DrosophilaTF 1.1)
Names: prd-HD
Organisms: Drosophila melanogaster
Libraries: DrosophilaTF 1.1 1
1 Down T.A, Bergman C.M, Su J, Hubbard T.J. Large-scale discovery of promoter motifs in Drosophila melanogaster. PLoS computational biology 3:e7 (2007). [Pubmed]
Length: 14
Consensus: GaTAATyGATTAks
Weblogo:
PSSM: P0 A C G T
01 0 0.2414 0.6897 0.069 G
02 0.4483 0.2414 0.1724 0.1379 a
03 0 0 0 1 T
04 0.931 0 0.069 0 A
05 1 0 0 0 A
06 0 0 0 1 T
07 0 0.5172 0 0.4828 y
08 0 0 1 0 G
09 1 0 0 0 A
10 0 0 0 1 T
11 0 0.0345 0 0.9655 T
12 0.931 0 0 0.069 A
13 0.1724 0.1724 0.2759 0.3793 k
14 0.1034 0.4483 0.3103 0.1379 s
Binding TFs: prd-HD (Homeobox domain, 'Paired box' domain, Homeobox KN domain, Homeodomain-like domain)
Binding Sites: prd-HD_1
prd-HD_10
prd-HD_11
prd-HD_12
prd-HD_13
prd-HD_14
prd-HD_15
prd-HD_16
prd-HD_17
prd-HD_18
prd-HD_19
prd-HD_2
prd-HD_20
prd-HD_21
prd-HD_22
prd-HD_23
prd-HD_24
prd-HD_25
prd-HD_26
prd-HD_27
prd-HD_28
prd-HD_29
prd-HD_3
prd-HD_30
prd-HD_31
prd-HD_32
prd-HD_33
prd-HD_34
prd-HD_35
prd-HD_4
prd-HD_5
prd-HD_6
prd-HD_7
prd-HD_8
prd-HD_9
Publications: Wilson D, Sheng G, Lecuit T, Dostatni N, Desplan C. Cooperative dimerization of paired class homeo domains on DNA. Genes & development 7:2120-34 (1993). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.