DNA Binding Motif

						

			
Accessions: GltR (DBTBS 1.0)

			
Names: GltR
Organisms: Bacillus subtilis
Libraries: DBTBS 1.0 1
1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed]
Length: 15
Consensus: ATCTsAwTTTkrgAT
Weblogo: 
PSSM: P0      A      C      G      T
01      1      0      0      0      A
02      0      0      0      1      T
03      0      1      0      0      C
04      0      0      0      1      T
05      0   0.50   0.50      0      s
06      1      0      0      0      A
07   0.50      0      0   0.50      w
08      0      0      0      1      T
09      0      0      0      1      T
10   0.23      0      0   0.77      T
11      0      0   0.63   0.37      k
12   0.63      0   0.37      0      r
13   0.17      0   0.66   0.17      g
14      1      0      0      0      A
15      0      0      0      1      T
Binding TFs: GltR (Bacterial regulatory helix-turn-helix protein, lysR family, LysR substrate binding domain)
Binding Sites: gltA_2
gltA_3
gltR_1
gltR_2
			
Publications: Belitsky B.R, Sonenshein A.L. Altered transcription activation specificity of a mutant form of Bacillus subtilis GltR, a LysR family member. Journal of bacteriology 179:1035-43 (1997). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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