DNA Binding Motif
Accessions: | GBX2_DBD_1 (HumanTF 1.0), MA0890.1 (JASPAR 2024) |
Names: | GBX2 |
Organisms: | Homo sapiens |
Libraries: | HumanTF 1.0 1, JASPAR 2024 2 1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Notes: | Site type: monomeric; SELEX cycle: 3, HT-SELEX |
Length: | 10 |
Consensus: | rsyAATTArs |
Weblogo: | |
PSSM: | P0 A C G T 01 10334 5147 8145 3740 r 02 3761 10517 8429 4658 s 03 699 15511 106 11855 y 04 27366 570 1113 227 A 05 27366 250 114 25 A 06 0 61 65 27366 T 07 318 570 673 27366 T 08 27366 73 30 650 A 09 8236 4502 10638 3991 r 10 5389 9159 7075 5743 s |
Type: | Heterodimer |
Binding TFs: | GBX2_DBD (Homeobox domain) P52951 (Homeobox domain) P52951 |
Publications: | Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed] Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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