DNA Binding Motif
| Accessions: | UP00078A_2 (UniPROBE 20160601) |
| Names: | ARID domain-containing protein 3A, Arid3a, AT rich interactive domain 3A (Bright like), AT-rich interactive domain-containing protein 3A, B-cell regulator of IgH transcription, Dead ringer-like protein 1, Dri1, Dril1 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 15 |
| Consensus: | hmmvrtATcrdrtyk |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.31 0.28 0.16 0.25 h 02 0.25 0.30 0.22 0.23 m 03 0.26 0.34 0.25 0.16 m 04 0.27 0.34 0.33 0.06 v 05 0.37 0.15 0.39 0.08 r 06 0.07 0.19 0.16 0.58 t 07 0.81 0.07 0.10 0.02 A 08 0.04 0.17 0.10 0.69 T 09 0.18 0.58 0.21 0.03 c 10 0.50 0.07 0.25 0.17 r 11 0.35 0.10 0.27 0.28 d 12 0.44 0.21 0.25 0.10 r 13 0.25 0.09 0.18 0.49 t 14 0.22 0.32 0.12 0.34 y 15 0.20 0.10 0.33 0.37 k |
| Binding TFs: | UP00078A (ARID/BRIGHT DNA binding domain) |
| Binding Sites: | AAATTAAT AATCAAAA AATTAAAA AATTAATA AATTAATT AATTTTAT ATATCAAA ATTAAATA ATTAATCA ATTAATTA ATTAATTG ATTTGATA CTAATTAA GATATCAA GATTAATC GCAATTAA TAATCAAA TAATTAAA TTAATCAA AATTTAAT |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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