DNA Binding Motif

						

			
Accessions: CytR (RegulonDB 7.5)

			
Names: CytR
Organisms: ECK12
Libraries: RegulonDB 7.5 1
1 Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed]
Length: 18
Consensus: whwdKtwTGCAAwbkdtt
Weblogo: 
PSSM: P0      A      C      G      T
01      7      0      3      7      w
02      5      5      1      6      h
03      8      2      2      5      w
04      5      1      5      6      d
05      0      0      5     12      K
06      2      4      2      9      t
07      7      1      4      5      w
08      2      3      0     12      T
09      0      0     17      0      G
10      2     12      0      3      C
11     16      0      1      0      A
12     15      0      0      2      A
13      6      4      0      7      w
14      0      6      5      6      b
15      3      3      5      6      k
16      6      0      6      5      d
17      0      2      4     11      t
18      3      0      3     11      t
Binding TFs: ECK120004670 (Bacterial regulatory proteins, lacI family, Periplasmic binding proteins and sugar binding domain of LacI family, Periplasmic binding protein-like domain, Periplasmic binding protein domain)
Binding Sites: ECK120012675
ECK120013078
ECK120013396
ECK120013444
ECK120013448
ECK120013485
ECK120013543
ECK120013557
ECK120013655
ECK120016528
ECK125108588
ECK125108590
ECK125108592
ECK125108595
ECK125108597
ECK125108601
ECK125108603
ECK125108605
ECK125108609
ECK125108637
ECK125108639
			
	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.