DNA Binding Motif

Accessions: 1xs9_A (3D-footprint 2022-04-03)
Names: Multiple antibiotic resistance protein marA
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 2022-04-03 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: A MODEL OF THE TERNARY COMPLEX FORMED BETWEEN MARA, THE ALPHA-CTD OF RNA POLYMERASE AND DNA
Length: 16
Consensus: tGCCannnnnTGnnAA
Weblogo:
PSSM: P0 A C G T
01 10 17 8 61 t
02 0 0 96 0 G
03 0 96 0 0 C
04 0 96 0 0 C
05 61 17 8 10 a
06 24 24 24 24 n
07 24 24 24 24 n
08 24 24 24 24 n
09 24 24 24 24 n
10 24 24 24 24 n
11 0 0 0 96 T
12 0 0 96 0 G
13 24 24 24 24 n
14 24 24 24 24 n
15 69 8 11 8 A
16 96 0 0 0 A
Binding TFs: 1xs9_A (Bacterial regulatory helix-turn-helix proteins, AraC family, Helix-turn-helix domain)
Binding Sites: 1xs9_B
1xs9_C
Publications: Dangi B, Gronenborn A.M, Rosner J.L, Martin R.G. Versatility of the carboxy-terminal domain of the alpha subunit of RNA polymerase in transcriptional activation: use of the DNA contact site as a protein contact site for MarA. Molecular microbiology 54:45-59 (2004). [Pubmed]

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