DNA Binding Motif

						

			
Accessions: Hoxd9_DBD_2 (HumanTF 1.0), MA0913.1 (JASPAR 2024)

			
Names: Hoxd9
Organisms: Mus musculus
Libraries: HumanTF 1.0 1, JASPAR 2024 2
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: Site type: monomeric; SELEX cycle: 4, HT-SELEX
Length: 10
Consensus: gymATwAAaw
Weblogo: 
PSSM: P0      A      C      G      T
01     75     44    194      9      g
02     24    275     12    194      y
03    194     77     36      0      m
04    194      2     31      5      A
05     13      7      7    194      T
06     99      3      0     95      w
07    194      2      0     17      A
08    194      7      0      7      A
09    194     26     40     44      a
10     83     28     19     65      w
Type: Heterodimer
Binding TFs: P28357 (Homeobox domain, Hox9 activation region    )
Hoxd9_DBD (Homeobox domain)
P28357
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]


Shanmugam K, Green NC, Rambaldi I, Saragovi HU, Featherstone MS. PBX and MEIS as non-DNA-binding partners in trimeric complexes with HOX proteins. Mol Cell Biol 19:7577-88 (1999). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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