DNA Binding Motif

Accessions: IHF (RegulonDB 7.5)
Names: IHF, integration host factor (IHF), &beta, subunit
Organisms: ECK12
Libraries: RegulonDB 7.5 1
1 Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed]
Length: 13
Consensus: TAAytaatTGwWw
Weblogo:
PSSM: P0 A C G T
01 11 6 11 67 T
02 76 4 5 10 A
03 76 12 0 7 A
04 11 30 19 35 y
05 15 22 18 40 t
06 28 22 22 23 a
07 40 12 20 23 a
08 19 18 7 51 t
09 5 0 0 90 T
10 4 0 71 20 G
11 59 5 4 27 w
12 26 2 0 67 W
13 34 5 4 52 w
Binding TFs: ECK120004910 (Bacterial DNA-binding protein)
Binding Sites: ECK120011226
ECK120011255
ECK120011257
ECK120011259
ECK120011261
ECK120011263
ECK120011398
ECK120011455
ECK120011519
ECK120011537
ECK120011555
ECK120011557
ECK120011559
ECK120011561
ECK120011570
ECK120011618
ECK120011653
ECK120011662
ECK120011768
ECK120011779
ECK120011781
ECK120011806
ECK120011870
ECK120012139
ECK120012233
ECK120012271
ECK120012273
ECK120012282
ECK120012390
ECK120012431
ECK120012456
ECK120012458
ECK120012810
ECK120012838
ECK120012840
ECK120012842
ECK120013149
ECK120013151
ECK120013153
ECK120013155
ECK120013157
ECK120013159
ECK120013161
ECK120013266
ECK120013312
ECK120013336
ECK120013359
ECK120013361
ECK120013433
ECK120013476
ECK120013505
ECK120013531
ECK120013533
ECK120013535
ECK120013661
ECK120013663
ECK120013733
ECK120013735
ECK120013737
ECK120013754
ECK120013824
ECK120013874
ECK120013876
ECK120013878
ECK120013880
ECK120013934
ECK120013936
ECK120013982
ECK120013985
ECK120014041
ECK120014077
ECK120014097
ECK120014099
ECK120014101
ECK120015219
ECK120015221
ECK120016016
ECK120017136
ECK120020712
ECK120023299
ECK120026323
ECK120029476
ECK120029479
ECK120029480
ECK120029890
ECK120029981
ECK120029983
ECK120029985
ECK120029987
ECK120033051
ECK120033090
ECK120033092
ECK120033101
ECK120033214
ECK125108635
ECK125110237
ECK125110239
ECK125134914
Publications: Tucker NP., D'Autr?aux B., Studholme DJ., Spiro S., Dixon R. DNA binding activity of the Escherichia coli nitric oxide sensor NorR suggests a conserved target sequence in diverse proteobacteria. J Bacteriol. 186(19):6656-60 (2004). [Pubmed]

Ogasawara H., Yamada K., Kori A., Yamamoto K., Ishihama A. Regulation of the Escherichia coli csgD promoter: interplay between five transcription factors. Microbiology. 156(Pt 8):2470-83 (2010). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.