DNA Binding Motif

						

			
Accessions: MA0148.2 (JASPAR 2024)

			
Names: FOXA1
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 11
Consensus: TGTTTrCwywg
Weblogo: 
PSSM: P0      A      C      G      T
01     13      1      2    876      T
02    108      7    772      7      G
03      1      7      4    885      T
04      4      7     24    862      T
05      6      3     77    811      T
06    478     12    368     38      r
07      4    808      5     79      C
08    289    106      5    496      w
09     42    369     69    414      y
10    379      7     24    482      w
11     89    125    467    211      g
Type: Heterodimer
Binding TFs: P55317 (Fork head domain, Forkhead N-terminal region, HNF3 C-terminal domain)
P55317
			
Publications: Zhang Y, Liu T, Meyer C.A, Eeckhoute J, Johnson D.S, Bernstein B.E, Nusbaum C, Myers R.M, Brown M, Li W, Liu X.S. Model-based analysis of ChIP-Seq (MACS). Genome biology 9:R137 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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