DNA Binding Motif

Accessions: MA0060.3 (JASPAR 2024)
Names: NFYA
Organisms: Homo sapiens, Oryctolagus cuniculus, Rattus norvegicus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 11
Consensus: rrCCAATCAgm
Weblogo:
PSSM: P0 A C G T
01 1897 757 1815 356 r
02 1924 404 1858 639 r
03 23 4657 34 111 C
04 31 4713 28 53 C
05 4683 29 17 96 A
06 4584 94 124 23 A
07 37 132 11 4645 T
08 166 4215 319 125 C
09 4088 213 489 35 A
10 611 1131 2713 370 g
11 1855 1369 887 714 m
Type: Heterodimer
Binding TFs: P23511 (CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B)
P23511
Binding Sites: MA0060.3.1
MA0060.3.10
MA0060.3.11
MA0060.3.12
MA0060.3.13
MA0060.3.14
MA0060.3.15
MA0060.3.16
MA0060.3.17
MA0060.3.18
MA0060.3.19 / MA0060.3.2
MA0060.3.20
MA0060.3.3
MA0060.3.4
MA0060.3.5
MA0060.3.6
MA0060.3.7
MA0060.3.8
MA0060.3.9
Publications: Mantovani R. A survey of 178 NF-Y binding CCAAT boxes. Nucleic Acids Res. 26:1135-1143 (1998). [Pubmed]

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