DNA Binding Motif

Accessions: MA1343.1 (JASPAR 2018), M0200 (AthalianaCistrome v4_May2016)
Names: bZIP52, bZIP52.DAP, T05875;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1, AthalianaCistrome v4_May2016 2
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 14
Consensus: wTGmCAGCykktmw
Weblogo:
PSSM: P0 A C G T
01 207 68 109 215 w
02 51 68 46 434 T
03 0 0 548 51 G
04 309 290 0 0 m
05 0 599 0 0 C
06 599 0 0 0 A
07 1 0 598 0 G
08 3 479 85 32 C
09 0 198 4 397 y
10 61 78 242 218 k
11 116 0 332 151 k
12 98 118 139 244 t
13 187 204 65 143 m
14 247 102 76 174 w
Binding TFs: T05875 / Q8VWG0 (Basic region leucine zipper, bZIP transcription factor)
Binding Sites: MA1343.1.1
MA1343.1.10
MA1343.1.11
MA1343.1.12
MA1343.1.13
MA1343.1.14
MA1343.1.15
MA1343.1.16
MA1343.1.17
MA1343.1.18
MA1343.1.19
MA1343.1.2
MA1343.1.20
MA1343.1.3
MA1343.1.4
MA1343.1.5
MA1343.1.6
MA1343.1.7
MA1343.1.8
MA1343.1.9
Publications: Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). [Pubmed]

O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

Disclaimer

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