footprintDB - a database of transcription factors with annotated cis elements (DNA motifs and sites) and binding interfaces

DNA Binding Motif

Accessions:	FNR (RegulonDB 7.5)
Names:	FNR
Organisms:	ECK12
Libraries:	RegulonDB 7.5 ¹ ¹ Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed]
Length:	14
Consensus:	tTGaTywayATCAA
Weblogo:
PSSM:	P0 A C G T 01 17 8 10 48 t 02 5 8 6 64 T 03 13 10 58 2 G 04 47 14 8 14 a 05 10 3 13 57 T 06 17 28 3 35 y 07 28 10 16 29 w 08 48 12 11 12 a 09 20 23 11 29 y 10 66 0 11 6 A 11 4 0 0 79 T 12 0 72 5 6 C 13 80 1 0 2 A 14 73 8 0 2 A
Binding TFs:	ECK120004795 (Cyclic nucleotide-binding domain, Bacterial regulatory proteins, crp family, Crp-like helix-turn-helix domain)
Binding Sites:	ECK120011231 ECK120011246 ECK120011248 ECK120011366 ECK120011368 ECK120011370 ECK120011600 ECK120011609 ECK120011878 ECK120011886 ECK120012050 ECK120012052 ECK120012056 ECK120012172 ECK120012237 ECK120012280 ECK120012304 ECK120012587 ECK120012683 ECK120012694 ECK120012696 ECK120012808 ECK120012818 ECK120012820 ECK120012911 ECK120013104 ECK120013106 ECK120013108 ECK120013308 ECK120013310 ECK120013355 ECK120013357 ECK120013431 ECK120013527 ECK120013657 ECK120013674 ECK120013690 ECK120013692 ECK120013694 ECK120013717 ECK120013725 ECK120013864 ECK120013869 ECK120013908 ECK120013992 ECK120014001 ECK120014024 ECK120014026 ECK120014059 ECK120014092 ECK120014158 ECK120014165 ECK120015610 ECK120015751 ECK120016208 ECK120016211 ECK120016213 ECK120017032 ECK120017039 ECK120020662 ECK120020665 ECK120020667 ECK120020669 ECK120020671 ECK120020673 ECK120020675 ECK120020677 ECK120020679 ECK120020681 ECK120020684 ECK120020686 ECK120020688 ECK120020690 ECK120020710 ECK120023162 ECK120023165 ECK120023167 ECK120031751 ECK120034556 ECK120051410 ECK120051412 ECK120051414 ECK120051416 ECK120051418 ECK125108733 ECK125110187 ECK125141262
Publications:	Hasona A., Self WT., Shanmugam KT. Transcriptional regulation of the moe (molybdate metabolism) operon of Escherichia coli. Arch Microbiol. 175(3):178-88 (2001). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.

User:
Password:
	Register