DNA Binding Motif

						

			
Accessions: MA0258.1 (JASPAR 2024)

			
Names: ESR2
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-chip
Length: 18
Consensus: cwrGGTCAsgkTGmCCys
Weblogo: 
PSSM: P0      A      C      G      T
01     78    161     63     55      c
02    158     51     41    107      w
03    186     15    154      2      r
04     27      0    275     55      G
05     18     20    319      0      G
06     13     19     33    292      T
07      0    357      0      0      C
08    337      1      0     19      A
09     49    123    113     72      s
10     64     63    149     81      g
11     52     61    147     97      k
12     21     33     24    279      T
13     63     25    265      4      G
14    178     99     19     61      m
15     34    268      2     53      C
16     46    289      0     22      C
17     27     90      0    240      y
18     60     94    136     67      s
Type: Heterodimer
Binding TFs: Q92731 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains), Estrogen receptor beta)
Q92731
Binding Sites: MA0258.1.1
MA0258.1.10
MA0258.1.11
MA0258.1.12
MA0258.1.13
MA0258.1.14
MA0258.1.15
MA0258.1.16
MA0258.1.17
MA0258.1.18
MA0258.1.19
MA0258.1.2
MA0258.1.20
MA0258.1.3
MA0258.1.4
MA0258.1.5
MA0258.1.6
MA0258.1.7
MA0258.1.8
MA0258.1.9
			
Publications: Liu Y, Gao H, Marstrand T.T, Ström A, Valen E, Sandelin A, Gustafsson J.A, Dahlman-Wright K. The genome landscape of ERalpha- and ERbeta-binding DNA regions. Proceedings of the National Academy of Sciences of the United States of America 105:2604-9 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.