DNA Binding Motif

Accessions: 3w6v_A (3D-footprint 20210203)
Names: AdpA
Organisms: Streptomyces griseus
Libraries: 3D-footprint 20210203 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the DNA-binding domain of AdpA, the global transcriptional factor, in complex with a target DNA
Length: 6
Consensus: cCGcCA
Weblogo:
PSSM: P0 A C G T
01 16 45 19 16 c
02 4 81 4 7 C
03 3 3 85 5 G
04 12 60 12 12 c
05 0 96 0 0 C
06 78 6 6 6 A
Binding TFs: 3w6v_A (Bacterial regulatory helix-turn-helix proteins, AraC family, Helix-turn-helix domain)
Binding Sites: 3w6v_B
3w6v_C
Publications: Yao M.D, Ohtsuka J, Nagata K, Miyazono K, Zhi Y, Ohnishi Y, Tanokura M. Complex structure of the DNA-binding domain of AdpA, the global transcription factor in Streptomyces griseus, and a target duplex DNA reveals the structural basis of its tolerant DNA sequence specificity. The Journal of biological chemistry 288:31019-29 (2013). [Pubmed]

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