DNA Binding Motif

						

			
Accessions: HipB (RegulonDB 7.5)

			
Names: HipB
Organisms: ECK12
Libraries: RegulonDB 7.5 1
1 Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed]
Length: 19
Consensus: TATCCbbKWdhGMGGATAA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0      4      T
02      4      0      0      0      A
03      0      0      0      4      T
04      0      4      0      0      C
05      0      4      0      0      C
06      0      2      1      1      b
07      0      2      1      1      b
08      0      0      1      3      K
09      3      0      0      1      W
10      1      0      2      1      d
11      2      1      0      1      h
12      0      0      4      0      G
13      1      3      0      0      M
14      0      0      4      0      G
15      0      0      4      0      G
16      4      0      0      0      A
17      0      0      0      4      T
18      4      0      0      0      A
19      4      0      0      0      A
Binding TFs: ECK120004911 (Helix-turn-helix, Helix-turn-helix domain, Cro/C1-type HTH DNA-binding domain, Helix-turn-helix domain, Helix-turn-helix domain)
Binding Sites: ECK125135151
ECK125135153
ECK125135155
ECK125135157
			
	
			


			

				

				
				
				
				

			

			

		

	
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