DNA Binding Motif

						

			
Accessions: retn (DrosophilaTF 1.1)

			
Names: retn
Organisms: Drosophila melanogaster
Libraries: DrosophilaTF 1.1 1
1 Down T.A, Bergman C.M, Su J, Hubbard T.J. Large-scale discovery of promoter motifs in Drosophila melanogaster. PLoS computational biology 3:e7 (2007). [Pubmed]
Length: 10
Consensus: tyrATTAatm
Weblogo: 
PSSM: P0      A      C      G      T
01 0.2143 0.1667 0.1667 0.4524      t
02 0.2143 0.3571 0.1667 0.2619      y
03    0.5      0    0.5      0      r
04      1      0      0      0      A
05 0.0238      0      0 0.9762      T
06 0.0238      0      0 0.9762      T
07  0.881      0  0.119      0      A
08 0.6667  0.119 0.1429 0.0714      a
09 0.2143  0.119 0.1429 0.5238      t
10 0.2857 0.2619 0.2381 0.2143      m
Binding TFs: retn (ARID/BRIGHT DNA binding domain)
			
Publications: Gregory S. L., Kortschak R. D., Kalionis B., Staint R. Characterization of the dead ringer gene identifies a novel, highly conserved family of sequence-specific DNA-binding proteins. Mol. Cell. Biol. 16:792-799 (1996). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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