DNA Binding Motif

Accessions: MA0123.1 (JASPAR 2018)
Names: abi4
Organisms: Zea mays
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: SELEX
Length: 10
Consensus: CGsyGCcccc
Weblogo:
PSSM: P0 A C G T
01 0 49 0 0 C
02 12 0 37 0 G
03 0 20 29 0 s
04 0 23 1 25 y
05 1 3 45 0 G
06 0 45 4 0 C
07 5 28 6 10 c
08 3 25 11 10 c
09 3 31 5 10 c
10 4 26 7 12 c
Binding TFs: Q8L7W9 (AP2 domain)
Binding Sites: MA0123.1.1
MA0123.1.10 / MA0123.1.9 / MA0123.1.11
MA0123.1.12
MA0123.1.13
MA0123.1.14
MA0123.1.15
MA0123.1.16 / MA0123.1.17
MA0123.1.18
MA0123.1.19
MA0123.1.2 / MA0123.1.3
MA0123.1.20
MA0123.1.4
MA0123.1.5
MA0123.1.6
MA0123.1.7
MA0123.1.8
Publications: Niu X., Helentjaris T., Bate N. J. Maize ABI4 binds coupling element1 in abscisic acid and sugar response genes.. Plant Cell 14:2565-2575 (2002). [Pubmed]

Disclaimer

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research.