DNA Binding Motif

						

			
Accessions: CN0054.1 (JASPAR 2024)

			
Names: LM54
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 17
Consensus: ycATTCATCACTGTCAg
Weblogo: 
PSSM: P0      A      C      G      T
01     20     79     38    104      y
02     50    152      9     30      c
03    181     25     11     24      A
04      1      3      6    231      T
05     15     26      1    199      T
06      4    223      3     11      C
07    230      1      2      8      A
08      1      2      5    233      T
09     11    221      0      9      C
10    190      3      1     47      A
11      9    170     12     50      C
12      5      0      0    236      T
13      2      2    236      1      G
14      4     11      5    221      T
15      1    228      6      6      C
16    194     16      0     31      A
17     40     59    132     10      g
			
Publications: Xie X, Mikkelsen T.S, Gnirke A, Lindblad-Toh K, Kellis M, Lander E.S. Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proceedings of the National Academy of Sciences of the United States of America 104:7145-50 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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