DNA Binding Motif

						

			
Accessions: 3zhm_A (3D-footprint 20231221)

			
Names: CI
Organisms: Lactococcus phage TP901-1
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: N-terminal domain of the CI repressor from bacteriophage TP901-1 in complex with the OL2 operator half-site
Length: 6
Consensus: CTGraC
Weblogo: 
PSSM: P0      A      C      G      T
01      7     81      0      8      C
02      0      0      8     88      T
03      0      0     96      0      G
04     44     14     24     14      r
05     59     14     16      7      a
06      0     96      0      0      C
Binding TFs: 3zhm_A (Helix-turn-helix)
Binding Sites: 3zhm_B
3zhm_C
			
Publications: Frandsen K.H, Rasmussen K.K, Jensen M.R, Hammer K, Pedersen M, Poulsen J.C, Arleth L, Lo Leggio L. Binding of the N-terminal domain of the lactococcal bacteriophage TP901-1 CI repressor to its target DNA: a crystallography, small angle scattering, and nuclear magnetic resonance study. Biochemistry 52:6892-904 (2013). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.