DNA Binding Motif

Accessions: MA0497.1 (JASPAR 2018)
Names: MEF2C
Organisms: Homo sapiens
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: ChIP-seq
Length: 15
Consensus: rdkcyAAAAATAGmw
Weblogo:
PSSM: P0 A C G T
01 705 321 676 507 r
02 733 151 573 752 d
03 431 196 822 760 k
04 382 1412 78 337 c
05 0 985 0 1224 y
06 1616 256 74 263 A
07 1706 32 241 230 A
08 2107 0 87 15 A
09 2131 0 2 76 A
10 2135 0 4 70 A
11 56 62 0 2091 T
12 2177 0 32 0 A
13 389 120 1671 29 G
14 975 836 148 250 m
15 1009 450 126 624 w
Binding TFs: Q06413 (SRF-type transcription factor (DNA-binding and dimerisation domain), Holliday junction regulator protein family C-terminal repeat)
Binding Sites: MA0497.1.1
MA0497.1.10
MA0497.1.11
MA0497.1.12
MA0497.1.13
MA0497.1.14
MA0497.1.15
MA0497.1.16
MA0497.1.17
MA0497.1.18
MA0497.1.19
MA0497.1.2
MA0497.1.20
MA0497.1.3
MA0497.1.4
MA0497.1.5
MA0497.1.6
MA0497.1.7
MA0497.1.8
MA0497.1.9
Publications: Andres V., Cervera M., Mahdavi V. Determination of the consensus binding site for MEF2 expressed in muscle and brain reveals tissue-specific sequence constraints. J. Biol. Chem. 270:23246-23249 (1995). [Pubmed]

Disclaimer

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research.