DNA Binding Motif

						

			
Accessions: PF0158.1 (JASPAR 2024)

			
Names: CCCNNNNNNAAGWT
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: phylogenetic
Length: 14
Consensus: CCCwsmycmAAGwT
Weblogo: 
PSSM: P0      A      C      G      T
01      0    480      0      0      C
02      0    480      0      0      C
03      0    480      0      0      C
04    149     79    104    148      w
05    104    169    123     84      s
06    172    125     72    111      m
07    108    121     99    152      y
08     64    220     96    100      c
09    157    202     65     56      m
10    480      0      0      0      A
11    480      0      0      0      A
12      0      0    480      0      G
13    320      0      0    160      w
14      0      0      0    480      T
Binding Sites: PF0158.1.1
PF0158.1.10
PF0158.1.11 / PF0158.1.9
PF0158.1.12
PF0158.1.13
PF0158.1.14
PF0158.1.15
PF0158.1.16
PF0158.1.17 / PF0158.1.5
PF0158.1.18
PF0158.1.19
PF0158.1.2
PF0158.1.20
PF0158.1.3
PF0158.1.4
PF0158.1.6
PF0158.1.7
PF0158.1.8
			
Publications: Xie X, Lu J, Kulbokas E.J, Golub T.R, Mootha V, Lindblad-Toh K, Lander E.S, Kellis M. Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature 434:338-45 (2005). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.