DNA Binding Motif

Accessions: 6uer_A (3D-footprint 20210203)
Names: TATA-box-binding protein 1
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20210203 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal form 2: Structure of TBP bound to C-C mismatch at pH 7
Length: 8
Consensus: cCtTTATA
Weblogo:
PSSM: P0 A C G T
01 16 54 13 13 c
02 0 96 0 0 C
03 16 13 13 54 t
04 0 0 0 96 T
05 0 0 0 96 T
06 96 0 0 0 A
07 0 0 0 96 T
08 96 0 0 0 A
Binding TFs: 6uer_A (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 6uer_C
6uer_D
Publications: Afek A, Shi H, Rangadurai A, Sahay H, Senitzki A, Xhani S, Fang M, Salinas R, Mielko Z, Pufall MA, Poon GMK, Haran TE, Schumacher MA, Al-Hashimi HM, Gordân R. DNA mismatches reveal conformational penalties in protein-DNA recognition. Nature 587:291-296 (2020). [Pubmed]

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