DNA Binding Motif

						

			
Accessions: MA1057.1 (JASPAR 2024)

			
Names: SPL12
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 8
Consensus: wGTACGgh
Weblogo: 
PSSM: P0      A      C      G      T
01    272    182    211    335      w
02    143     49    761     47      G
03      8     38     12    942      T
04    947     46      5      2      A
05      5    994      0      1      C
06     76     78    744    102      G
07    249     53    538    159      g
08    278    262    151    310      h
Type: Heterodimer
Binding TFs: Q9S7P5 (SBP domain)
Q9S7P5
			
Publications: Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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