DNA Binding Motif
| Accessions: | MA1059.2 (JASPAR 2024), M0736 (AthalianaCistrome v4_May2016) |
| Names: | SPL5, SPL5.DAP, T15374; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 12 |
| Consensus: | aayyGTACGGAh |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 244 107 109 138 a 02 273 73 123 129 a 03 102 150 89 257 y 04 25 153 36 384 y 05 0 0 598 0 G 06 0 0 0 598 T 07 598 0 0 0 A 08 0 598 0 0 C 09 0 0 598 0 G 10 0 0 598 0 G 11 546 8 1 43 A 12 170 259 19 150 h |
| Type: | Heterodimer |
| Binding TFs: | Q9S758 / T15374 (SBP domain) Q9S758 |
| Binding Sites: | MA1059.2.1 MA1059.2.10 MA1059.2.11 MA1059.2.12 MA1059.2.13 MA1059.2.14 MA1059.2.15 MA1059.2.16 MA1059.2.17 MA1059.2.18 MA1059.2.19 MA1059.2.2 MA1059.2.20 MA1059.2.3 MA1059.2.4 MA1059.2.5 MA1059.2.6 MA1059.2.7 MA1059.2.8 MA1059.2.9 |
| Publications: | Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed] O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
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