DNA Binding Motif

						

			
Accessions: MA1392.1 (JASPAR 2024), M0519 (AthalianaCistrome v4_May2016)

			
Names: MYB98, MYB98.DAP, T19243;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: wwwwwGTAACGkwwr
Weblogo: 
PSSM: P0      A      C      G      T
01    230     73    130    161      w
02    319     38     56    181      w
03    259     48     67    220      w
04    239     65     57    233      w
05    161    126     57    250      w
06     45      0    549      0      G
07     14      0      0    580      T
08    594      0      0      0      A
09    594      0      0      0      A
10      0    594      0      0      C
11      2     67    492     33      G
12      0     36    307    251      k
13    314     80      0    200      w
14    201    138     16    239      w
15    245     59    167    123      r
Type: Heterodimer
Binding TFs: Q9S7L2 / T19243 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
Q9S7L2
Binding Sites: MA1392.1.1
MA1392.1.10
MA1392.1.11
MA1392.1.12
MA1392.1.13
MA1392.1.14
MA1392.1.15
MA1392.1.16
MA1392.1.17
MA1392.1.18
MA1392.1.19
MA1392.1.2
MA1392.1.20
MA1392.1.3 / MA1392.1.4
MA1392.1.5
MA1392.1.6
MA1392.1.7
MA1392.1.8
MA1392.1.9
			
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.