DNA Binding Motif

						

			
Accessions: MA1330.1 (JASPAR 2024), M0861 (AthalianaCistrome v4_May2016)

			
Names: ATHB24, ZHD6, ATHB24.DAP, T07422;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: wawhrTRATTArtdw
Weblogo: 
PSSM: P0      A      C      G      T
01    368     45     29    158      w
02    357     63     54    126      a
03    260     76     88    176      w
04    179    153     76    192      h
05    217     35    242    106      r
06     12     13      2    573      T
07    411     14    175      0      R
08    585      0     13      2      A
09      0      0      0    600      T
10      0      0      0    600      T
11    598      0      2      0      A
12    394      7    192      7      r
13     75    108    142    275      t
14    167     73    160    200      d
15    286     53     95    166      w
Binding TFs: T07422 (ZF-HD protein dimerisation region)
Binding Sites: MA1330.1.16
MA1330.1.13
MA1330.1.1
MA1330.1.9
MA1330.1.3
MA1330.1.4
MA1330.1.10
MA1330.1.11
MA1330.1.12
MA1330.1.14
MA1330.1.15
MA1330.1.17
MA1330.1.18
MA1330.1.19
MA1330.1.2
MA1330.1.20
MA1330.1.5
MA1330.1.6
MA1330.1.7
MA1330.1.8
			
Publications: Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.