DNA Binding Motif

Accessions: ATF6B_3 (HT-SELEX2 May2017), UN0111.1 (JASPAR 2024)
Names: ATF6B, ATF6B(var.2)
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1, JASPAR 2024 2
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: HT-SELEX
Length: 12
Consensus: tGCCACGTCAyc
Weblogo:
PSSM: P0 A C G T
01 1982 8224 1656 21938 t
02 365 94 21938 524 G
03 4407 21938 36 54 C
04 217 21938 6 245 C
05 21938 135 3 0 A
06 16 21938 21 26 C
07 31 73 21938 25 G
08 4 56 136 21938 T
09 287 21938 113 29 C
10 21938 137 248 30 A
11 417 13028 2722 8910 y
12 4153 11544 3308 2932 c
Type: Heterodimer
Binding TFs: ATF6B (bZIP transcription factor, Basic region leucine zipper)
Q99941 (bZIP transcription factor, Basic region leucine zipper)
Q99941
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

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