DNA Binding Motif

Accessions: MA1277.1 (JASPAR 2018), M0264 (AthalianaCistrome v4_May2016)
Names: Adof1, Adof1.DAP, T02414;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1, AthalianaCistrome v4_May2016 2
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 21
Consensus: aaaaaraAAAAGtaraaaawr
Weblogo:
PSSM: P0 A C G T
01 277 94 97 127 a
02 311 71 106 107 a
03 331 50 117 97 a
04 316 76 106 97 a
05 274 68 122 131 a
06 164 139 202 90 r
07 388 48 108 51 a
08 466 0 3 126 A
09 595 0 0 0 A
10 595 0 0 0 A
11 575 0 20 0 A
12 0 0 595 0 G
13 96 113 94 292 t
14 371 18 90 116 a
15 342 26 177 50 r
16 381 52 83 79 a
17 326 69 66 134 a
18 293 51 135 116 a
19 288 87 131 89 a
20 266 78 95 156 w
21 273 62 151 109 r
Binding TFs: T02414 / O82155 (Dof domain, zinc finger)
Binding Sites: MA1277.1.1
MA1277.1.10
MA1277.1.11
MA1277.1.12
MA1277.1.13
MA1277.1.14
MA1277.1.15
MA1277.1.16
MA1277.1.17
MA1277.1.18
MA1277.1.19
MA1277.1.2
MA1277.1.20
MA1277.1.3
MA1277.1.4
MA1277.1.5
MA1277.1.6
MA1277.1.7
MA1277.1.8
MA1277.1.9
Publications: Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). [Pubmed]

O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

Disclaimer

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research.