DNA Binding Motif

Accessions: 5i2d_R (3D-footprint 20231221)
Names: Transcriptional regulator, Crp family
Organisms: strain HB8 / ATCC 27634 / DSM 579, Thermus thermophilus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of T. thermophilus TTHB099 class II transcription activation complex: TAP-RPo
Length: 5
Consensus: tCAcA
Weblogo:
PSSM: P0 A C G T
01 12 10 10 64 t
02 0 96 0 0 C
03 85 10 1 0 A
04 10 64 12 10 c
05 86 0 0 10 A
Binding TFs: 5i2d_R (Cyclic nucleotide-binding domain, Bacterial regulatory proteins, crp family, Crp-like helix-turn-helix domain)
Binding Sites: 5i2d_T
5i2d_U
Publications: Feng Y, Zhang Y, Ebright RH. Structural basis of transcription activation. Science 352:1330-3 (2016). [Pubmed]

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