DNA Binding Motif

						

			
Accessions: 6cim_DN (3D-footprint 20231221)

			
Names: High mobility group protein B1
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Pre-Reaction Complex, RAG1(E962Q)/2-nicked/intact 12/23RSS complex in Mn2+
Length: 4
Consensus: AAgt
Weblogo: 
PSSM: P0      A      C      G      T
01     96      0      0      0      A
02     96      0      0      0      A
03     16     13     54     13      g
04     16     13     13     54      t
Binding TFs: 6cim_N (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Binding Sites: 6cim_G
6cim_J
			
Publications: Kim MS, Chuenchor W, Chen X, Cui Y, Zhang X, Zhou ZH, Gellert M, Yang W. Cracking the DNA Code for V(D)J Recombination. Mol Cell 70:358-370 (2018). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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