DNA Binding Motif

Accessions: 5d4s_A (3D-footprint 20231221)
Names: Arabinose metabolism transcriptional repressor
Organisms: Bacillus subtilis, strain 168
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of AraR(DBD) in complex with operator ORX1
Length: 7
Consensus: CGTATGT
Weblogo:
PSSM: P0 A C G T
01 0 96 0 0 C
02 0 0 96 0 G
03 9 7 7 73 T
04 75 7 7 7 A
05 7 7 7 75 T
06 0 0 96 0 G
07 7 9 7 73 T
Binding TFs: 5d4s_A (Bacterial regulatory proteins, gntR family, DeoR-like helix-turn-helix domain, HTH domain)
Binding Sites: 5d4s_T
5d4s_U
Publications: Jain D, Narayanan N, Nair DT. Plasticity in Repressor-DNA Interactions Neutralizes Loss of Symmetry in Bipartite Operators. J Biol Chem 291:1235-42 (2016). [Pubmed]

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