DNA Binding Motif

Accessions: MA1269.1 (JASPAR 2024), M0246 (AthalianaCistrome v4_May2016)
Names: dof4.5, dof45.DAP, T18551;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 14
Consensus: rawAAAGtwrcTTT
Weblogo:
PSSM: P0 A C G T
01 182 108 194 116 r
02 402 72 47 79 a
03 349 7 27 217 w
04 600 0 0 0 A
05 600 0 0 0 A
06 600 0 0 0 A
07 0 0 600 0 G
08 104 125 57 314 t
09 282 15 135 168 w
10 235 54 233 78 r
11 139 361 45 55 c
12 91 48 33 428 T
13 67 31 45 457 T
14 65 51 24 460 T
Type: Heterodimer
Binding TFs: O49550 / T18551 (Dof domain, zinc finger)
O49550
Binding Sites: MA1269.1.1
MA1269.1.10
MA1269.1.11
MA1269.1.12
MA1269.1.13
MA1269.1.14
MA1269.1.15
MA1269.1.16
MA1269.1.17
MA1269.1.18
MA1269.1.19
MA1269.1.2
MA1269.1.20
MA1269.1.3
MA1269.1.4
MA1269.1.5
MA1269.1.6
MA1269.1.7
MA1269.1.8
MA1269.1.9
Publications: Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). [Pubmed]

O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.