DNA Binding Motif
| Accessions: | MA1221.1 (JASPAR 2024), M0077 (AthalianaCistrome v4_May2016) |
| Names: | RAP2-6, RAP26, RAP26.DAP, T05799; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 15 |
| Consensus: | tkrCGGCGGmGghgg |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 103 139 18 337 t 02 64 22 326 185 k 03 187 11 381 18 r 04 1 574 0 22 C 05 0 0 597 0 G 06 1 15 581 0 G 07 8 567 0 22 C 08 0 3 579 15 G 09 15 60 511 11 G 10 197 310 14 76 m 11 67 9 454 67 G 12 146 47 353 51 g 13 200 173 49 175 h 14 114 32 337 114 g 15 107 62 346 82 g |
| Type: | Heterodimer |
| Binding TFs: | Q7G1L2 / T05799 (AP2 domain) Q7G1L2 |
| Binding Sites: | MA1221.1.4 MA1221.1.10 MA1221.1.7 MA1221.1.13 / MA1221.1.8 MA1221.1.15 / MA1221.1.18 MA1221.1.20 MA1221.1.14 MA1221.1.19 MA1221.1.16 MA1221.1.17 MA1221.1.5 MA1221.1.2 / MA1221.1.3 MA1221.1.12 MA1221.1.1 MA1221.1.11 MA1221.1.6 MA1221.1.9 |
| Publications: | Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). [Pubmed] O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.