DNA Binding Motif

Accessions: M1371_1.02 (CISBP 1.02)
Names: T120854_1.02, TOD6
Organisms: Saccharomyces cerevisiae
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Length: 8
Consensus: sscGATGs
Weblogo:
PSSM: P0 A C G T
01 0.1844 0.3133 0.2724 0.2298 s
02 0.1669 0.3103 0.3328 0.1901 s
03 0.1617 0.4098 0.2249 0.2035 c
04 0.0476 0.0375 0.7599 0.1550 G
05 0.7731 0.1067 0.0840 0.0362 A
06 0.0379 0.0467 0.0134 0.9020 T
07 0.0571 0.0001 0.9301 0.0127 G
08 0.1390 0.3124 0.3629 0.1857 s
Binding TFs: T120854_1.02 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
Publications: Badis G, Chan E.T, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson C.D, Gossett A.J, Hasinoff M.J, Warren C.L, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo Z.X, Clarke N.D, Lieb J.D, Ansari A.Z, Nislow C, Hughes T.R. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Molecular cell 32:878-87 (2008). [Pubmed]

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