DNA Binding Motif

						

			
Accessions: RXRB_DBD (HumanTF 1.0), MA0855.1 (JASPAR 2024)

			
Names: RXRB
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1, JASPAR 2024 2
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 3, HT-SELEX
Length: 14
Consensus: rRGGTCAAAGGTCA
Weblogo: 
PSSM: P0      A      C      G      T
01   1430    342   3156    224      r
02   1659      8   3737      3      R
03     14      1   3955     10      G
04      1      0   3642    492      G
05      0      2     11   4481      T
06     37   7053    112    350      C
07   5823      0     12      1      A
08   5820      5    119     31      A
09   5729      1    221      0      A
10      1      0   3867      7      G
11      2      0   3745    312      G
12      1      2     19   4431      T
13     16   7053    102    184      C
14   5738     13    299      3      A
Type: Heterodimer
Binding TFs: P28702 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
RXRB_DBD (Zinc finger, C4 type (two domains))
P28702
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]


Bastien J, Rochette-Egly C. Nuclear retinoid receptors and the transcription of retinoid-target genes. Gene : (2004). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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