DNA Binding Motif

Accessions: MA1198.1 (JASPAR 2024), M0428 (AthalianaCistrome v4_May2016)
Names: HAT2, HAT2.DAP, T21724;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 11
Consensus: wyyAATCATtw
Weblogo:
PSSM: P0 A C G T
01 300 23 43 232 w
02 110 186 112 190 y
03 0 249 0 349 y
04 598 0 0 0 A
05 598 0 0 0 A
06 0 0 0 598 T
07 0 541 0 57 C
08 598 0 0 0 A
09 113 12 0 473 T
10 114 42 36 406 t
11 229 52 131 186 w
Type: Heterodimer
Binding TFs: P46601 / T21724 (Homeobox domain, Homeobox associated leucine zipper, HD-ZIP protein N terminus)
P46601
Publications: Sessa G., Morelli G., Ruberti I. The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities. EMBO J. 12:3507-3517 (1993). [Pubmed]

O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

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