DNA Binding Motif

Accessions: MA0005.1 (JASPAR 2018)
Names: AG
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1
1 [Pubmed]
Notes: SELEX
Length: 11
Consensus: CCwaAwwkGGh
Weblogo:
PSSM: P0 A C G T
01 0 87 2 1 C
02 2 86 0 2 C
03 38 9 7 36 w
04 61 5 2 22 a
05 73 1 1 15 A
06 31 3 4 52 w
07 23 16 17 34 w
08 20 13 26 31 k
09 22 0 64 4 G
10 1 0 82 7 G
11 27 25 9 29 h
Binding TFs: P17839 (SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region)
Binding Sites: MA0005.1.1
MA0005.1.10
MA0005.1.11
MA0005.1.12
MA0005.1.13
MA0005.1.14
MA0005.1.15
MA0005.1.16
MA0005.1.17
MA0005.1.18
MA0005.1.19
MA0005.1.2
MA0005.1.20
MA0005.1.3
MA0005.1.4
MA0005.1.5
MA0005.1.6
MA0005.1.7
MA0005.1.8
MA0005.1.9
Publications: Huang H., Mizukami Y., Hu Y., Ma H. Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS. Nucleic Acids Res. 21:4769-4776 (1993). [Pubmed]

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