DNA Binding Motif

						

			
Accessions: CTCF_full (HumanTF 1.0)

			
Names: CTCF
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: monomeric; SELEX cycle: 4
Length: 17
Consensus: wGCGCCmyCTAGyGGym
Weblogo: 
PSSM: P0      A      C      G      T
01   5423    546   1733   4208      w
02   2600    371  11366    632      G
03      0   8052      0    505      C
04     64      0  12480     86      G
05    641   9591      8     46      C
06     46  10107      0      0      C
07   5823   5201    207    241      m
08     87   7091      0   3888      y
09      0   8872      1      0      C
10     37     49     23  14151      T
11  10566    290   1625   1355      A
12     90   1616   9828    764      G
13    183   5157      0   7952      y
14      2      0   8472    121      G
15    406    114   7463   2221      G
16   2660   4936    143   9766      y
17   4213   3590   2456   1302      m
Binding TFs: CTCF_full (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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