DNA Binding Motif

Accessions: VRN1 (EEADannot 2022-05-31)
Names: AY750993
Organisms: Hordeum vulgare cv Strider
Libraries: EEADannot 2022-05-31 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Length: 10
Consensus: CCarAAAwGG
Weblogo:
PSSM: P0 A C G T
01 0.186 0.715 0.070 0.027 C
02 0.101 0.706 0.075 0.116 C
03 0.570 0.173 0.140 0.116 a
04 0.562 0.064 0.311 0.062 r
05 0.947 0.017 0.035 0.000 A
06 0.842 0.011 0.029 0.116 A
07 0.787 0.073 0.068 0.070 A
08 0.573 0.033 0.093 0.299 w
09 0.241 0.000 0.758 0.000 G
10 0.147 0.000 0.850 0.001 G
Binding TFs: VRN1 (SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region)
Publications: Deng W, Casao Mc, Wang P, Sato K, Hayes PM, Jean Finnegan E, Trvaskis B (2015) Direct links between the vernalization response and other key traits of cereal crops. Nat Comm 6:5882 [Pubmed]

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