DNA Binding Motif

Accessions: CONS1 (EEADannot 2022-05-31)
Names: CONS_ARATH
Organisms: Arabidopsis thaliana
Libraries: EEADannot 2022-05-31 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Length: 9
Consensus: TGTGnnATG
Weblogo:
PSSM: P0 A C G T
01 0.00 0.00 0.00 1.00 T
02 0.00 0.00 1.00 0.00 G
03 0.00 0.00 0.00 1.00 T
04 0.00 0.00 1.00 0.00 G
05 0.25 0.25 0.25 0.25 n
06 0.25 0.25 0.25 0.25 n
07 1.00 0.00 0.00 0.00 A
08 0.00 0.00 0.00 1.00 T
09 0.00 0.00 1.00 0.00 G
Binding TFs: CONSTANS (B-box zinc finger, CCT motif)
Binding Sites: CONS1_1
Publications: Tiwari SB, Shen Y, Chang HC, Hou Y, Harris A, Ma SF, McPartland M, Hymus GJ, Adam L, Marion C, Belachew A, Repetti PP, Reuber TL, Ratcliffe OJ. The flowering time regulator CONSTANS is recruited to the FLOWERING LOCUS T promoter via a unique cis-element. New Phytol 187:57-66 (2010). [Pubmed]

Disclaimer

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research.