footprintDB - a database of transcription factors with annotated cis elements (DNA motifs and sites) and binding interfaces

Database 'UniPROBE 20160601' (DNA Binding Motifs 251-300)

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If you want to search for a protein sequence or a DNA motif use the Sequence Search Form.

Pages: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20

Accessions	Names	Consensus	Organisms
UP00540A_4 UP00540A_5	add, AI854843, AU023367, Bph, brachyphalangy, GLI-Kruppel family member GLI3, Gli3, GLI3FL, Pdn, Transcriptional activator GLI3, Xt, Zinc finger protein GLI3	hasrgkgGACCACCCrgvdrgw	Mus musculus
UP00540A_6	add, AI854843, AU023367, Bph, brachyphalangy, GLI-Kruppel family member GLI3, Gli3, GLI3FL, Pdn, Transcriptional activator GLI3, Xt, Zinc finger protein GLI3	rytcmhygCCaCmCacgckhgy	Mus musculus
UP00024A_1	Gli5, GLIS family zinc finger 2, Glis2, Klf16, MGC36775, Nkl	ywwsGACCCCCCayrd	Mus musculus
UP00024A_2	Gli5, GLIS family zinc finger 2, Glis2, Klf16, MGC36775, Nkl	wwTAttAwtAAAga	Mus musculus
UP00318A_1	Gln3, Nitrogen regulatory protein GLN3, YER040W	rkwwhGsCcTTATCarsmmwa	Saccharomyces cerevisiae
UP00042A_1	(NCBI), gene model 397, Gm397, LOC245109	mwdaTGTGCACAymmky	Mus musculus
UP00042A_2	(NCBI), gene model 397, Gm397, LOC245109	rrmrGCACACACkcmm	Mus musculus
UP00424A_1	EG232974, Gm4881, predicted gene 4881	rbsaAyTTCCGGTwrw	Mus musculus
UP00423A_1	EG432800, Gm5454, Predicted gene 5454	cdmaACWTCCGGtmvc	Mus musculus
UP00084A_1	1110050A04Rik, AI256615, AI481278, glucocorticoid modulatory element binding protein 1, Glucocorticoid element-binding protein 1, GMEB-1, Gmeb1	smkkkkRCGYmmgayrs	Mus musculus
UP00084A_2	1110050A04Rik, AI256615, AI481278, glucocorticoid modulatory element binding protein 1, Glucocorticoid element-binding protein 1, GMEB-1, Gmeb1	kgrkcrACGTygtymw	Mus musculus
UP00112A_1	goosecoid, Gsc, Homeobox protein goosecoid	aawmryTAATCCsytwv	Mus musculus
UP00127A_1	genomic screened homeo box 2, Gsh-2, Gsh2, Homeobox protein GSH-2	asryTAATTAgyysAk	Mus musculus
UP00301A_1	Gsm1, J0824, Putative 70.4 kDa transcriptional regulatory protein in IME2-MEF2 region	wtyaarwAwCTCCGGArtwkw	Saccharomyces cerevisiae
UP00484A_3	CBF1, GST-CSL_Fig2, IGKJRB, IGKJRB1, KBF2, MGC61669, RBP-J, RBPJ, RBPJK, RBPSUH, signal binding protein for immunoglobulin kappa J region, SUH	yswrcmgCGTGGGAAccwstsk	Homo sapiens
UP00484A_2	CBF1, GST-CSL_Fig4, IGKJRB, IGKJRB1, KBF2, MGC61669, RBP-J, RBPJ, RBPJK, RBPSUH, signal binding protein for immunoglobulin kappa J region, SUH	gvmsCGTGGGAAmywck	Homo sapiens
UP00480A_1 UP00484A_1	GST-CSL-NOTCH1, hN1, Neurogenic locus notch homolog protein 1, notch 1, Translocation-associated notch protein TAN-1, CBF1, IGKJRB, IGKJRB1, KBF2, MGC61669, RBP-J, RBPJ, RBPJK, RBPSUH, recombination signal binding protein for immunoglobulin kappa J region, SUH	tkwksmsCGTGGGAAccastsb	Homo sapiens
UP00480A_4 UP00484A_4	GST-NOTCH1_CSL-6His, hN1, Neurogenic locus notch homolog protein 1, notch 1, Translocation-associated notch protein TAN-1, CBF1, IGKJRB, IGKJRB1, KBF2, MGC61669, RBP-J, RBPJ, RBPJK, RBPSUH, recombination signal binding protein for immunoglobulin kappa J region, SUH	wtmccrTGGGAAcwwk	Homo sapiens
UP00480A_5 UP00484A_5 UP00485A_1	GST-NOTCH1_CSL-6His_MAML1, hN1, Neurogenic locus notch homolog protein 1, notch 1, Translocation-associated notch protein TAN-1, CBF1, IGKJRB, IGKJRB1, KBF2, MGC61669, RBP-J, RBPJ, RBPJK, RBPSUH, recombination signal binding protein for immunoglobulin kappa J region, SUH, FLJ53540, KIAA0200, Mam-1, Mam1, MAML 1, MAML-1, mastermind-like 1 (Drosophila)	ksmscgTGGGAayswst	Homo sapiens
UP00480A_3	GST-NOTCH1_Fig2, hN1, Neurogenic locus notch homolog protein 1, notch 1, Translocation-associated notch protein TAN-1	wakwstkarTGGGAAmtwwbmkd	Homo sapiens
UP00480A_2	GST-NOTCH1_Fig4, hN1, Neurogenic locus notch homolog protein 1, notch 1, Translocation-associated notch protein TAN-1	ytaawamaAsgArm	Homo sapiens
UP00347A_1	DEH1, Gzf3, J0806, NIL2, Protein GZF3, YJL110C	twvmrrCYGATAAGrrwkwh	Saccharomyces cerevisiae
UP00457A_1	ERN4, Hac1, Homologous to Atf/Creb1, IRE15	srkggGgACACGTGTymasawc	Saccharomyces cerevisiae
UP00315A_1	Hal9, Halotolerance protein 9, O0938, YOL089C	TCCGnnnnnnnnnsCGGA	Saccharomyces cerevisiae
UP00458A_1 UP00458A_2	CYP1, Hap1, Heme Activator Protein	scrwycyCGGAGwTAAcgccsky	Saccharomyces cerevisiae
UP00458A_3	CYP1, Hap1, Heme Activator Protein	TCGGCCGA	Saccharomyces cerevisiae
UP00055A_1	1700058O05Rik, BE629963, C330012F01Rik, C86454, Hbp1, high mobility group box transcription 1, HMG box transcription factor 1, HMG box-containing protein 1	wcwwTsAATGAATgry	Mus musculus
UP00055A_2	1700058O05Rik, BE629963, C330012F01Rik, C86454, Hbp1, high mobility group box transcription 1, HMG box transcription factor 1, HMG box-containing protein 1	wdkyCCCATTGTvhasw	Mus musculus
UP00148A_1	Hdx, Highly divergent homeobox, Not Available	wrkkmGAAATCAtcbha	Mus musculus
UP00594B_1	ANF, CPHD5, hAnf, HESX1_E149K_R1, homeobox expressed in ES cells 1, protein ANF, MGC138294, RPX	rcrwrdsCYAATTRGtkgwwsw	Homo sapiens
UP00594C_1	ANF, CPHD5, hAnf, HESX1_N125S_R1, homeobox expressed in ES cells 1, protein ANF, MGC138294, RPX	kkycscryTAATTArtmakcsg	Homo sapiens
UP00594C_2	ANF, CPHD5, hAnf, HESX1_N125S_R2, homeobox expressed in ES cells 1, protein ANF, MGC138294, RPX	wmakhtgcyAATTrrcmwrwwhw	Homo sapiens
UP00594D_1	ANF, CPHD5, hAnf, HESX1_R160C_R1, homeobox expressed in ES cells 1, protein ANF, MGC138294, RPX	yagmhskaymwraawmsmcwaw	Homo sapiens
UP00594A_1	ANF, CPHD5, hAnf, HESX1_REF_R1, homeobox expressed in ES cells 1, protein ANF, MGC138294, RPX	gkscscryTAATTArymmgcgg	Homo sapiens
UP00594A_2	ANF, CPHD5, hAnf, HESX1_REF_R2, homeobox expressed in ES cells 1, protein ANF, MGC138294, RPX	ryrtkwrCyAATTrGtbgwmgw	Homo sapiens
UP00035A_1	AA408311, Hic-1, Hic1, hypermethylated in cancer 1, Hypermethylated in cancer protein	dykrTGCCAaCCtrcy	Mus musculus
UP00035A_2	AA408311, Hic-1, Hic1, hypermethylated in cancer 1, Hypermethylated in cancer protein	kggkrTGCCCawwmdv	Mus musculus
UP00387A_1	HLH-1, MyoD1	ksrACAGCTGTyrwrr	Caenorhabditis elegans
UP00548A_1 UP00548B_1	Helix Loop Helix Protein 1, HLH-1, MyoD1, HLH-1_L13R	sGgamrGrCACGTGtCsyhCysy	Caenorhabditis elegans
UP00548C_1	Helix Loop Helix Protein 1, HLH-1_L13T, MyoD1	rywgggRACAGCTGtyyksracm	Caenorhabditis elegans
UP00548D_1	Helix Loop Helix Protein 1, HLH-1_L13V, MyoD1	mrkrkrkRACAGcTGTymgrkmm	Caenorhabditis elegans
UP00358A_1	HLH-10	wAyyAwATwTrgmm	Caenorhabditis elegans
UP00357A_1	HLH-11	whyrATCAGCTGatsk	Caenorhabditis elegans
UP00363A_1	HLH-14	cwhaaaawawwwAa	Caenorhabditis elegans
UP00361A_1	HLH-15	agwaaaawrwhdwr	Caenorhabditis elegans
UP00378A_1	HLH-19	ctwwramwwwmmaw	Caenorhabditis elegans
UP00384A_1	HLH-2	wbraatataawvht	Caenorhabditis elegans
UP00359A_2 UP00384A_2	HLH-2_CND-1, hlh-5	mskaACAkCTGTyyaa	Caenorhabditis elegans
UP00358A_2 UP00384A_3	HLH-2_HLH-10	yvsamCACCTGTTmcrg	Caenorhabditis elegans
UP00363A_2 UP00384A_4	HLH-2_HLH-14	ykaaCAbCTGTCvmda	Caenorhabditis elegans

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.

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