footprintDB - a database of transcription factors with annotated cis elements (DNA motifs and sites) and binding interfaces

Database 'UniPROBE 20160601' (DNA Binding Motifs 751-800)

If you want to search for an specific entry use the Search Entry Form.
If you want to search for a protein sequence or a DNA motif use the Sequence Search Form.

Pages: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20

Accessions	Names	Consensus	Organisms
UP00000A_1	AU022421, MAD homolog 3 (Drosophila), Madh3, mMad3, Mothers against decapentaplegic 3, Mothers against DPP homolog 3, Smad 3, Smad3	mdwatCCAGACrkbasm	Mus musculus
UP00000A_2	AU022421, MAD homolog 3 (Drosophila), Madh3, mMad3, Mothers against decapentaplegic 3, Mothers against DPP homolog 3, Smad 3, Smad3	kmmgcCCCGCCacyyyb	Mus musculus
UP00294A_1	Smp1, Transcription factor SMP1, YBR1245, YBR182C	tkacctwtAATTawaybwsmw	Saccharomyces cerevisiae
UP00621B_1	MGC10182, Neural crest transcription factor Slug, Protein snail homolog 2, SLUGH1, SNAI2_D119E_R1, WS2D, zinc finger protein SNAI2	wwwmrakrCACCTGyTakwhaw	Homo sapiens
UP00621A_1	MGC10182, Neural crest transcription factor Slug, Protein snail homolog 2, SLUGH1, SNAI2_REF_R1, WS2D, zinc finger protein SNAI2	wmkaratrCACCTGyTakwhmk	Homo sapiens
UP00621C_1	MGC10182, Neural crest transcription factor Slug, Protein snail homolog 2, SLUGH1, SNAI2_T234I_R1, WS2D, zinc finger protein SNAI2	tadarAwrCACCTGyTakwyad	Homo sapiens
UP00578A_1	ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 12, At1g32770, F6N18_15, F6N18.15, NAC transcription factor SND1, NAC domain-containing protein 12, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC012, NST3, Protein NAC SECONDARY WALL THICKENING PROMOTING 3, Protein SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 1, SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, SND1	kaTTACGCAAyC	Arabidopsis thaliana
UP00578A_2	ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 12, At1g32770, F6N18_15, F6N18.15, NAC transcription factor SND1, NAC domain-containing protein 12, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC012, NST3, Protein NAC SECONDARY WALL THICKENING PROMOTING 3, Protein SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 1, SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, SND1	gGTTGCGTAAyy	Arabidopsis thaliana
UP00069A_10 UP00075A_2	Sox-1, SOX-1 protein, Sox1, SRY-box containing gene 1, Sox-15, SOX-15 Sox15, SRY-box containing gene 15	btramTGwmATtysr	Mus musculus
UP00069A_15	Sox-1, SOX-1 protein, Sox1, SRY-box containing gene 1	wwtyaATTcAwTamdk	Mus musculus
UP00069A_16	Sox-1, SOX-1 protein, Sox1, SRY-box containing gene 1	myaTaATTGTTakys	Mus musculus
UP00069A_3 UP00101A_1	Sox-1, SOX-1 protein, Sox1, SRY-box containing gene 1, Sox-12, SOX-12 Sox12, SRY-box containing gene 12	twATTGTTcthawh	Mus musculus
UP00069A_4 UP00101A_2	Sox-1, SOX-1 protein, Sox1, SRY-box containing gene 1, Sox-12, SOX-12 Sox12, SRY-box containing gene 12	mmwyasACAAAGrawt	Mus musculus
UP00069A_5 UP00096A_1	Sox-1, SOX-1 protein, Sox1, SRY-box containing gene 1, AA407916, AW259412, Sox-13, SOX-13 protein, Sox13, SRY-box containing gene 13	wtwrgAACAATwwwtw	Mus musculus
UP00069A_6 UP00096A_2	Sox-1, SOX-1 protein, Sox1, SRY-box containing gene 1, AA407916, AW259412, Sox-13, SOX-13 protein, Sox13, SRY-box containing gene 13	rtrytGGgtGGGwawwt	Mus musculus
UP00069A_9 UP00075A_1	Sox-1, SOX-1 protein, Sox1, SRY-box containing gene 1, Sox-15, SOX-15 Sox15, SRY-box containing gene 15	wrkwgAACAATwrrtwt	Mus musculus
UP00030A_1 UP00069A_1	1110038H03Rik, 6230403H02Rik, AI836553, end1, Sox-11, Sox11, SRY-box containing gene 11, factor SOX-11, Sox-1, SOX-1 protein, Sox1, SRY-box containing gene 1	wkwarAACAAWGraywa	Mus musculus
UP00030A_2 UP00069A_2	1110038H03Rik, 6230403H02Rik, AI836553, end1, Sox-11, Sox11, SRY-box containing gene 11, factor SOX-11, Sox-1, SOX-1 protein, Sox1, SRY-box containing gene 1	arAATTGTywkrrw	Mus musculus
UP00004A_1 UP00069A_7	Sox-14, Sox14, SRY-box containing gene 14, Transcription factor SOX-14, Sox-1, protein, Sox1, SRY-box containing gene 1	khtaATTATAATwwdm	Mus musculus
UP00004A_2 UP00069A_8	Sox-14, Sox14, SRY-box containing gene 14, Transcription factor SOX-14, Sox-1, protein, Sox1, SRY-box containing gene 1	ykyasACAATrgmks	Mus musculus
UP00014A_1 UP00069A_11	Sox-17, Sox17, SRY-box containing gene 17, Transcription factor SOX-17, Sox-1, protein, Sox1, SRY-box containing gene 1	mwaAACAATTrAwhw	Mus musculus
UP00014A_2 UP00069A_12	Sox-17, Sox17, SRY-box containing gene 17, Transcription factor SOX-17, Sox-1, protein, Sox1, SRY-box containing gene 1	gwycacATTCAtryrat	Mus musculus
UP00064A_1 UP00069A_13	AI385749, Ra, Ragl, Sox-18, Sox18, SRY-box containing gene 18, Sry-related gene, Transcription factor SOX-18, Sox-1, SOX-1 protein, Sox1, SRY-box containing gene 1	twyhATTGTTbtmamw	Mus musculus
UP00064A_2 UP00069A_14	AI385749, Ra, Ragl, Sox-18, Sox18, SRY-box containing gene 18, Sry-related gene, Transcription factor SOX-18, Sox-1, SOX-1 protein, Sox1, SRY-box containing gene 1	gkrsyraATtyrwdhm	Mus musculus
UP00071A_1	Sox21, SRY-box containing gene 21, Transcription factor SOX-21	hwtwATTATAATwdwk	Mus musculus
UP00071A_2	Sox21, SRY-box containing gene 21, Transcription factor SOX-21	vvycwATTGTtcckhkr	Mus musculus
UP00023A_1	Sox30, SRY-box containing gene 30, Transcription factor SOX-30	rwdgAACAATkraayt	Mus musculus
UP00023A_2	Sox30, SRY-box containing gene 30, Transcription factor SOX-30	tmwgATTATAATmcgs	Mus musculus
UP00062A_1	AA682046, Sox-4, Sox4, SRY-box containing gene 4, Transcription factor SOX-4	akdarAACAAAGracww	Mus musculus
UP00062A_2	AA682046, Sox-4, Sox4, SRY-box containing gene 4, Transcription factor SOX-4	grwarAATTGTtasrra	Mus musculus
UP00401A_1	ecotropic viral integration site 16, EVI16, OTTHUMP00000039358, Sox4, SRY (sex region Y)-box 4, SRY-related HMG-box gene 4, Transcription factor SOX-4	tadAACAAwGrvrw	Homo sapiens
UP00091A_1	AI528773, MGC124352, Sox-5, Sox5, SRY-box containing gene 5, Transcription factor	wwdrgAACAATwaahw	Mus musculus
UP00091A_2	AI528773, MGC124352, Sox-5, Sox5, SRY-box containing gene 5, Transcription factor	wwtCatmAttwasdd	Mus musculus
UP00034A_1	mSOX7, Sox-7, Sox7, SRY-box containing gene 7, Transcription factor SOX-7	mwtrwwrAACAATarawythyw	Mus musculus
UP00034A_2	mSOX7, Sox-7, Sox7, SRY-box containing gene 7, Transcription factor SOX-7	gtsswaATTrwstgwgkrcksy	Mus musculus
UP00051A_1	Sox-8, Sox8, SRY-box containing gene 8, Transcription factor SOX-8	kkatywATTGTTmwkwa	Mus musculus
UP00051A_2	Sox-8, Sox8, SRY-box containing gene 8, Transcription factor SOX-8	acATTCAtgamass	Mus musculus
UP00049A_1	nuclear antigen Sp100, Nuclear autoantigen Sp-100, Nuclear dot-associated Sp100 protein, Speckled 100 kDa	rwTwtmCGgAAAwt	Mus musculus
UP00049A_2	nuclear antigen Sp100, Nuclear autoantigen Sp-100, Nuclear dot-associated Sp100 protein, Speckled 100 kDa	ysCGtCGcktaawab	Mus musculus
UP00002A_1	5730497N03Rik, HF-1b, HF1-b, Sp4, trans-acting transcription factor 4, Transcription factor	kgymmCGCCCCCyysyc	Mus musculus
UP00002A_2	5730497N03Rik, HF-1b, HF1-b, Sp4, trans-acting transcription factor 4, Transcription factor	ywwAGGCGTGkCyhd	Mus musculus
UP00038A_1	Prostate epithelium-specific Ets transcription factor, Prostate-derived Ets factor, Prostate-specific Ets, SAM pointed domain containing ets transcription factor, SAM pointed domain-containing Ets transcription factor, Spdef	vyrcATCCGGaTwyty	Mus musculus
UP00038A_2	Prostate epithelium-specific Ets transcription factor, Prostate-derived Ets factor, Prostate-specific Ets, SAM pointed domain containing ets transcription factor, SAM pointed domain-containing Ets transcription factor, Spdef	rwbwAcATCCTAkwar	Mus musculus
UP00406A_1	Prostate epithelium-specific Ets transcription factor, Prostate-derived Ets factor, Prostate-specific Ets, SAM pointed domain containing ets transcription factor, SAM pointed domain-containing Ets transcription factor, Spdef	syrcwwCCGGwwyytb	Mus musculus
UP00419A_1	AU019198, C76795, Prf, Pu.1-related factor, Spi-C transcription factor (Spi-1/PU.1 related), Transcription factor Spi-C	rAAaGmGGAAGTwd	Mus musculus
UP00337A_1	BTF1, Spt15, TATA sequence-binding protein, TATA-binding factor, TATA-box factor, TATA-box-binding TBP, TBP1, Transcription factor D, Transcription initiation factor TFIID TBP subunit, YER148W	vwhtaGrwATATATAtwsrwd	Saccharomyces cerevisiae
UP00502A_1	S. purpuratus Tbrain (T-box transcription factor), SpTbr_rep1	ycgswvdAGGTGTGAAydrkwch	Strongylocentrotus purpuratus
UP00502B_1	S. purpuratus Tbrain (T-box transcription factor), SpTbr_rep2	smkvssgAGGTGyGAAmyrsdy	Strongylocentrotus purpuratus
UP00304A_1	Pre-rRNA-processing protein SRD1, Srd1, Suppressor of rRNA-processing defect protein 1, YCR18C	swmdygRGATCTACamrcws	Saccharomyces cerevisiae
UP00077A_1	AW049942, AW240594, serum response factor, Srf	wwCCwwATwwGGwa	Mus musculus

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.

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