Database '3D-footprint 20210203' (DNA Binding Motifs 401-450)

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AccessionsNamesConsensusOrganismsDescription and notes
3g9o_AGlucocorticoid receptorTGtncRattus norvegicusGR DNA-binding domain:Sgk 16bp complex-9
3g9o_ABGlucocorticoid receptorGrrCAnnnTGnncRattus norvegicusGR DNA-binding domain:Sgk 16bp complex-9
3g9p_ABGlucocorticoid receptorgnnCAnnnTGcTCRattus norvegicusGR DNA binding domain:Sgk 16bp complex-7
4hn5_ABGlucocorticoid receptorCCnGnnGCHomo sapiensGR DNA Binding Domain - TSLP nGRE Complex
4hn6_ABGlucocorticoid receptorCTcTnCcnnnnGCGHomo sapiensGR DNA Binding Domain R460D/D462R - TSLP nGRE Complex
5cc1_ABGlucocorticoid receptorGnnCAnnnTGnnCHomo sapiensS425G Glucocorticoid receptor DNA binding domain - (+)GRE complex
5cc1_WXGlucocorticoid receptorGnnCAnnntGtnCHomo sapiensS425G Glucocorticoid receptor DNA binding domain - (+)GRE complex
5e69_AGlucocorticoid receptoranaTTHomo sapiensGlucocorticoid receptor DNA binding domain - IL8 NF-kB response element

5e69_ABGlucocorticoid receptorCgnnnAAtnTHomo sapiensGlucocorticoid receptor DNA binding domain - IL8 NF-kB response element

5e6a_AGlucocorticoid receptorAATnCHomo sapiensGlucocorticoid receptor DNA binding domain - PLAU NF-kB response element

5e6a_ABGlucocorticoid receptorCAnnnAATnCHomo sapiensGlucocorticoid receptor DNA binding domain - PLAU NF-kB response element

5e6b_AGlucocorticoid receptorGnATTHomo sapiensGlucocorticoid receptor DNA binding domain - RELB NF-kB response element

5e6b_ABGlucocorticoid receptorCGnnnAATnCHomo sapiensGlucocorticoid receptor DNA binding domain - RELB NF-kB response element

5e6c_ABGlucocorticoid receptorAAtnTCCAHomo sapiensGlucocorticoid receptor DNA binding domain - CCL2 NF-kB response element

5emc_ABGlucocorticoid receptorGAACAnnntGTnCHomo sapiensTranscription factor GRDBD and smGRE complex
5emp_AGlucocorticoid receptorTGttCHomo sapiensTranscription factor GRDBD and mmGRE complex
5emp_ABGlucocorticoid receptorGnaCAnnnTGTnCHomo sapiensTranscription factor GRDBD and mmGRE complex
5emq_ABGlucocorticoid receptorGnACAnnntGtnCHomo sapiensTranscription factor GRDBD and GRE complex
5emq_BGlucocorticoid receptorgnaCAHomo sapiensTranscription factor GRDBD and GRE complex
6bse_ABGlucocorticoid receptorGnaCAnnngGSaguinus oedipusGlucocorticoid receptor bound to high cooperativity monomer sequence
1rzr_ADGlucose-resistance amylase regulatorTGTnAGCGCTnTCABacillus megateriumcrystal structure of transcriptional regulator-phosphoprotein-DNA complex
1rzr_CGlucose-resistance amylase regulatorCGCTnACABacillus megateriumcrystal structure of transcriptional regulator-phosphoprotein-DNA complex
1rzr_CGGlucose-resistance amylase regulatorTGTnAGCGCTTTCABacillus megateriumcrystal structure of transcriptional regulator-phosphoprotein-DNA complex
6y37_AHapBCCAATCAnnnCGEmericella nidulans
Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
CCAAT-binding complex from Aspergillus nidulans with cccA DNA
4g92_AHAPB proteinCCAATCannnnTEmericella nidulansCCAAT-binding complex from Aspergillus nidulans with DNA
5bmz_ABHcaR proteinATnTCAGnnnAAcTGAnATAcinetobacter baylyi
strain ATCC 33305 / BD413 / ADP1
Crystal Structure of Putative MarR Family Transcriptional Regulator HcaR from

5bmz_BHcaR proteinACTGAnATAcinetobacter baylyi
strain ATCC 33305 / BD413 / ADP1
Crystal Structure of Putative MarR Family Transcriptional Regulator HcaR from

5bmz_CDHcaR proteinATnTCAGtnnaGCTGAAcinetobacter baylyi
strain ATCC 33305 / BD413 / ADP1
Crystal Structure of Putative MarR Family Transcriptional Regulator HcaR from

5d5u_BHeat shock factor protein 1GtTcHomo sapiensCrystal structure of human Hsf1 with HSE DNA
5d5v_BHeat shock factor protein 1CnTTCCAHomo sapiensCrystal structure of human Hsf1 with Satellite III repeat DNA
5d5v_BDHeat shock factor protein 1GGAnTGGAHomo sapiensCrystal structure of human Hsf1 with Satellite III repeat DNA
5d8k_BHeat shock factor protein 2gTTcHomo sapiensHuman HSF2 DNA-Binding Domain bound to 2-site HSE DNA at

5d8l_DFHeat shock factor protein 2AGAaAsnntTCTHomo sapiensHuman HSF2 DNA Binding Domain in complex with 3-site HSE

5d8l_FHeat shock factor protein 2tAGAaHomo sapiensHuman HSF2 DNA Binding Domain in complex with 3-site HSE

1ic8_ABHEPATOCYTE NUCLEAR FACTOR 1-ALPHAGGTGArTTATtAACCAAHomo sapiensHEPATOCYTE NUCLEAR FACTOR 1A BOUND TO DNA : MODY3 GENE

1ic8_BHEPATOCYTE NUCLEAR FACTOR 1-ALPHATTaATAnntcGCCHomo sapiensHEPATOCYTE NUCLEAR FACTOR 1A BOUND TO DNA : MODY3 GENE

2h8r_ABHepatocyte nuclear factor 1-betatGGTGAATtATTAACHomo sapiensHepatocyte Nuclear Factor 1b bound to DNA: MODY5 Gene Product
2h8r_BHepatocyte nuclear factor 1-betaTAATnntTcACCaHomo sapiensHepatocyte Nuclear Factor 1b bound to DNA: MODY5 Gene Product
5x07_FHepatocyte nuclear factor 3-betaTAAACAHomo sapiensCrystal structure of FOXA2 DNA binding domain bound to a

4iqr_ABHepatocyte nuclear factor 4-alphaGACCtnTKaCCHomo sapiensMulti-Domain Organization of the HNF4alpha Nuclear Receptor Complex on DNA
4iqr_BHepatocyte nuclear factor 4-alphaAGGTCAHomo sapiensMulti-Domain Organization of the HNF4alpha Nuclear Receptor Complex on DNA
4iqr_EFHepatocyte nuclear factor 4-alphaTGACCTnTGACCHomo sapiensMulti-Domain Organization of the HNF4alpha Nuclear Receptor Complex on DNA
3cbb_AHepatocyte Nuclear Factor 4-alpha, DNA binding domainGTCCAHomo sapiensCrystal Structure of Hepatocyte Nuclear Factor 4alpha in complex with

3cbb_ABHepatocyte Nuclear Factor 4-alpha, DNA binding domainGTCCAnGGTTCAHomo sapiensCrystal Structure of Hepatocyte Nuclear Factor 4alpha in complex with

2d5v_BHepatocyte nuclear factor 6TgGTCAaTARattus norvegicusCrystal structure of HNF-6alpha DNA-binding domain in complex with the

1ckt_AHIGH MOBILITY GROUP 1 PROTEINgtCCRattus norvegicusCRYSTAL STRUCTURE OF HMG1 DOMAIN A BOUND TO A CISPLATIN-MODIFIED

4qr9_ABHigh mobility group protein B1tCGaRattus norvegicusCrystal structure of two HMGB1 Box A domains cooperating to

6cg0_CNHigh mobility group protein B1ACnnnnnnnnnnnncAAGTnnnnannnAGHomo sapiensCryo-EM structure of mouse RAG1/2 HFC complex (3.17 A)
6cg0_NHigh mobility group protein B1CTnnnnnnnnaCTtHomo sapiensCryo-EM structure of mouse RAG1/2 HFC complex (3.17 A)
6cij_CNHigh mobility group protein B1ACnnnnnnnnnnnnnAAGTnnnnAnnnAGHomo sapiensCryo-EM structure of mouse RAG1/2 HFC complex containing partial HMGB1



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