Database '3D-footprint 20210203' (DNA Binding Motifs 251-300)

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AccessionsNamesConsensusOrganismsDescription and notes
6p0t_BDNA-binding protein FisTgTntTEscherichia coli
strain K12
Crystal structure of ternary DNA complex "FX(1-2)-1Xis" containing E. coli

6p0u_ABEFDNA-binding protein FisAnnnnTGTGTTnnnnACMGCCEscherichia coli
strain K12
Crystal structure of ternary DNA complex " FX(1-2)-2Xis" containing E.

4rb1_ABDNA-binding transcriptional dual regulator of siderophore biosynthesis and transport(Fur family)CGATnnnnnTnnTnnnnnTMagnetospirillum gryphiswaldense
strain DSM 6361 / JCM 21280 / NBRC 15271 / MSR-1
Crystal structure of Magnetospirillum gryphiswaldense MSR-1 Fur-Mn2+-E. coli Fur box
4rb1_BDNA-binding transcriptional dual regulator of siderophore biosynthesis and transport(Fur family)cGAtMagnetospirillum gryphiswaldense
strain DSM 6361 / JCM 21280 / NBRC 15271 / MSR-1
Crystal structure of Magnetospirillum gryphiswaldense MSR-1 Fur-Mn2+-E. coli Fur box
4rb2_CDDNA-binding transcriptional dual regulator of siderophore biosynthesis and transport(Fur family)TnnnTGCAAAnnnTnTGCMagnetospirillum gryphiswaldense
strain DSM 6361 / JCM 21280 / NBRC 15271 / MSR-1
Crystal structure of Magnetospirillum gryphiswaldense MSR-1 SeMet-Fur-Mn2+-feoAB1 operator
4rb2_DDNA-binding transcriptional dual regulator of siderophore biosynthesis and transport(Fur family)TTTGCAnntAMagnetospirillum gryphiswaldense
strain DSM 6361 / JCM 21280 / NBRC 15271 / MSR-1
Crystal structure of Magnetospirillum gryphiswaldense MSR-1 SeMet-Fur-Mn2+-feoAB1 operator
4rb3_CDDNA-binding transcriptional dual regulator of siderophore biosynthesis and transport(Fur family)TGCAAAnnnTTTGCAnnnAMagnetospirillum gryphiswaldense
strain DSM 6361 / JCM 21280 / NBRC 15271 / MSR-1
Crystal structure of Magnetospirillum gryphiswaldense MSR-1 Fur-Mn2+-feoAB1 operator
4rb3_DDNA-binding transcriptional dual regulator of siderophore biosynthesis and transport(Fur family)TnnnTGCAAAMagnetospirillum gryphiswaldense
strain DSM 6361 / JCM 21280 / NBRC 15271 / MSR-1
Crystal structure of Magnetospirillum gryphiswaldense MSR-1 Fur-Mn2+-feoAB1 operator
4s04_BDNA-binding transcriptional regulator BasRTAAGCAAGKlebsiella pneumoniae JM45Crystal structure of Klebsiella pneumoniae PmrA in complex with PmrA

4s04_EFDNA-binding transcriptional regulator BasRTWAtnTTannnTAAGnAAKlebsiella pneumoniae JM45Crystal structure of Klebsiella pneumoniae PmrA in complex with PmrA

4s05_ADNA-binding transcriptional regulator BasRTtAAtKlebsiella pneumoniae JM45Crystal structure of Klebsiella pneumoniae PmrA in complex with PmrA

4s05_ABDNA-binding transcriptional regulator BasRCtTAGnnnannATTaAKlebsiella pneumoniae JM45Crystal structure of Klebsiella pneumoniae PmrA in complex with PmrA

4nhj_ADNA-binding transcriptional regulator RstAGAaTGTACAKlebsiella pneumoniae subsp. pneumoniae
strain ATCC 700721 / MGH 78578
Crystal structure of Klebsiella pneumoniae RstA DNA-binding domain in complex

4nhj_ABDNA-binding transcriptional regulator RstATGtACAnnCCGTkrCTKlebsiella pneumoniae subsp. pneumoniae
strain ATCC 700721 / MGH 78578
Crystal structure of Klebsiella pneumoniae RstA DNA-binding domain in complex

1zlk_ADormancy Survival RegulatoraGTCCCtMycobacterium tuberculosis
strain ATCC 25618 / H37Rv
Crystal Structure of the Mycobacterium tuberculosis Hypoxic Response Regulator DosR

1zlk_ABDormancy Survival RegulatorAGGGACTnnAGTCCCMycobacterium tuberculosis
strain ATCC 25618 / H37Rv
Crystal Structure of the Mycobacterium tuberculosis Hypoxic Response Regulator DosR

5z2t_CDDouble homeobox protein 4TTAsaTTAHomo sapiensCrystal structure of DNA-bound DUX4-HD2
5z2t_DDouble homeobox protein 4TAAtHomo sapiensCrystal structure of DNA-bound DUX4-HD2
5z6z_ADouble homeobox protein 4TGATtAgATTAGHomo sapiensCrystal structure of human DUX4 homeodomains bound to DNA
6a8r_ADouble homeobox protein 4rTCAHomo sapiensCrystal structure of DUX4 HD2 domain associated with ERG DNA

6dfy_CDouble homeobox protein 4AGAnAAHomo sapiensRemodeled crystal structure of DNA-bound DUX4-HD2
6dfy_CDDouble homeobox protein 4TnATCTnATCHomo sapiensRemodeled crystal structure of DNA-bound DUX4-HD2
6e8c_ADouble homeobox protein 4TTGATnAnATTACHomo sapiensCrystal structure of the double homeodomain of DUX4 in complex

6u81_ADouble homeobox protein 4ctaATCAAHomo sapiensCrystal Structure of the Double Homeodomain of DUX4 in Complex

6u82_DDouble homeobox protein 4CTAATCTanTCAHomo sapiensCrystal Structure of the Double Homeodomain of DUX4 in Complex

5zfw_ADouble homeobox protein 4-like protein 4CTAATCTnaTCAHomo sapiensCrystal structure of human DUX4 homeodomains bound to A11G DNA

5zfy_ADouble homeobox protein 4-like protein 4CTAATCTntTCAHomo sapiensCrystal structure of human DUX4 homeodomains bound to A12C DNA

5zfz_ADouble homeobox protein 4-like protein 4TGAAnaGATTAGHomo sapiensCrystal structure of human DUX4 homeodomains bound to A12T DNA

4yj0_ABCDoublesex- and mab-3-related transcription factor 1ATACAnTGTTGHomo sapiensCrystal structure of the DM domain of human DMRT1 bound

4yj0_CDoublesex- and mab-3-related transcription factor 1TGTTGHomo sapiensCrystal structure of the DM domain of human DMRT1 bound

1a1g_ADSNR ZINC FINGER PEPTIDEGCCCaCGCMus musculusDSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE)
4qtr_CDdualENHaAnnnnnTtComputational design of co-assembling protein-DNA nanowires
1p47_ABEarly growth response protein 1GGCGTGGGCGGCGTGGGCGTMus musculusCrystal Structure of tandem Zif268 molecules complexed to DNA
1p47_BEarly growth response protein 1gGCGTGGGCGTMus musculusCrystal Structure of tandem Zif268 molecules complexed to DNA
4r2a_AEarly growth response protein 1GCGTGGGcgHomo sapiensEgr1/Zif268 zinc fingers in complex with methylated DNA
4r2c_AEarly growth response protein 1GCGTGGGGtHomo sapiensEgr1/Zif268 zinc fingers in complex with hydroxymethylated DNA
4r2d_AEarly growth response protein 1AGCCCACGCHomo sapiensEgr1/Zif268 zinc fingers in complex with formylated DNA
4x9j_AEarly growth response protein 1annCCCAnnCHomo sapiensEGR-1 with Doubly Methylated DNA
1r0n_BEcdysone receptorTgaCCDrosophila melanogasterCrystal Structure of Heterodimeric Ecdsyone receptor DNA binding complex
1r0o_BEcdysone receptorTgaCCDrosophila melanogasterCrystal Structure of the Heterodimeric Ecdysone Receptor DNA-binding Complex
5zx2_FECF RNA polymerase sigma factor SigHGGGTnTACcACnnnnnnnnnnnnnnnGTnCCMycobacterium tuberculosis
strain ATCC 25618 / H37Rv
Mycobacterium tuberculosis RNA polymerase transcription initiation complex with ECF sigma

6jhe_AECF RNA polymerase sigma factor SigWGTtTCABacillus subtilis
strain 168
Crystal Structure of Bacillus subtilis SigW domain 4 in complexed

6jbq_FECF RNA polymerase sigma-E factorCGGAACTnnnnnnnnnnnnnAnTGTCnnAnCEscherichia coli
strain K12
CryoEM structure of Escherichia coli sigmaE transcription initiation complex containing

4umm_AEECR-USPGTtCAntnnACHeliothis virescens
Tobacco budworm moth
The Cryo-EM structure of the palindromic DNA-bound USP-EcR nuclear receptor

4wzs_DECU04_1440 proteinCTTTTATAGEncephalitozoon cuniculi (strain GB-M1)
Microsporidian parasite
Crystal structure of the Mot1 N-terminal domain in complex with

3hdd_ABENGRAILED HOMEODOMAINGTAATAACnTTADrosophila melanogasterENGRAILED HOMEODOMAIN DNA COMPLEX
5t7x_ABEpstein-Barr nuclear antigen 1GGATAGCnnntGcTACCCEpstein-Barr virus (strain GD1) (HHV-4)
Human herpesvirus 4
Crystal structure of HHV-4 EBNA1 DNA binding domain (patient-derived, nasopharyngeal

5t7x_BEpstein-Barr nuclear antigen 1GGATAgcEpstein-Barr virus (strain GD1) (HHV-4)
Human herpesvirus 4
Crystal structure of HHV-4 EBNA1 DNA binding domain (patient-derived, nasopharyngeal

6pw2_ABCDEpstein-Barr nuclear antigen 1ATAGCnnnTnTTnCCCnnnGGGnAGmnnnnnCTATCEpstein-Barr virus (strain B95-8) (HHV-4)
Human herpesvirus 4
Structural Basis for Cooperative Binding of EBNA1 to the Epstein-Barr

6pw2_BEpstein-Barr nuclear antigen 1GATAGcaEpstein-Barr virus (strain B95-8) (HHV-4)
Human herpesvirus 4
Structural Basis for Cooperative Binding of EBNA1 to the Epstein-Barr



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